PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g04220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 251aa    MW: 26538.1 Da    PI: 8.2325
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g04220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172971347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
   Vang11g04220.1 29 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 71
                     79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9212276IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-202575IPR009057Homeodomain-like
SMARTSM007172.9E-142674IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-142776IPR009057Homeodomain-like
CDDcd001674.98E-122972No hitNo description
PfamPF002499.1E-152971IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSRGRRDDLC KGNNLRMDAC PITAVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLSGRT  60
DNAIKNHWNS TLKRKCASIM IAEDPAAAAA GFSPQPLKRS FSAGAALPPG SPSGSDVSET  120
SAPGVVSPSH VFRPVAVRPV VETASSCDDG PTTSLSLSLP GVESSETSNR AGAMQANPFT  180
MAPVTTVASP AAEVGMGALN LSAEFMAVMH EMIKKEVRSY MEQQSAMCFQ GVDGFRNVSV  240
KRIGISRVDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbk_A3e-182575151MYB PROTO-ONCOGENE PROTEIN
1mbj_A3e-182575151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505860.11e-154PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW19e-47MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0L9TPG61e-163A0A0L9TPG6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4V61e-163A0A0S3R4V6_PHAAN; Uncharacterized protein
STRINGGLYMA05G21220.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-52myb domain protein 73